Smart Farms of the Future: Making Bioenergy Crops More Environmentally Friendly

by | 12.7.20

Farmers have enough worries – between bad weather, rising costs, and shifting market demands – without having to stress about the carbon footprint of their operations. But now a new set of projects by scientists at Lawrence Berkeley National Laboratory (Berkeley Lab) could make agriculture both more sustainable and more profitable.

The three projects, funded by the U.S. Department of Energy (DOE), leverage Berkeley Lab’s strengths in artificial intelligence, sensors, and ecological biology. They aim to quantify and reduce the carbon intensity of agriculture, including the farming of biofuel feedstocks such as corn, soy, and sorghum, while also increasing yield.

Crop-based biofuels have the potential to supply up to about 5% of U.S. energy demand, according to the DOE. Two of the new projects are part of the SMARTFARM program of DOE’s Advanced Research Projects Agency-Energy (ARPA-E). This initiative aspires to make the biofuel supply chain carbon negative – meaning it removes or sequesters more carbon than it emits – which would greatly improve biofuel’s benefits to the broader economy and environment. Scientists also hope that the increased productivity will have the effect of lowering costs and increasing farmers’ income.

“How can we make this Earth work for 7 billion people?” said Michael Schuppenhauer, who is leading one of the projects for an industry partner, Arva Intelligence, a startup based in Park City, Utah. “If we can develop a pathway for farmers to have a better bottom line and help the environment, that’s where everybody wins.”

A third project is supported by a DOE small business grant and is in partnership with Arva Intelligence.

Gathering massive amounts of data

In the first project, researchers led by Blake Simmons, director of Berkeley Lab’s Biological & Systems Engineering (BSE) Division, working with project lead, Arva Intelligence, will monitor five commercial farms in California and Arkansas growing corn and crops for straw. The farms will be equipped with state-of-the-art sensors to assess fertilizer, water, energy use, and crop yield, while monitoring towers registered with DOE’s AmeriFlux network will measure emissions of carbon dioxide, nitrous oxide, and methane at subsecond resolution.

The environmental and emissions impacts of biofuel production — one of the largest consumers of grain crops in the U.S. — are well understood, but emissions and opportunities for improvements at the field-level remain unclear. The Arva/Berkeley Lab team is one of four selected by ARPA-E to establish validation sites to “ground truth” solutions for emissions monitoring, with a variety of crop species included across the teams.

The Berkeley Lab team is considering anaerobic digestion of crop residues, which are the parts of the plants left on the field after the food crop has been harvested, to biogas as a viable pathway for farmers. “Crop residues are actually the largest pool of readily available sustainable biomass that you can efficiently convert into biofuels and bioproducts,” Simmons said. “We can use that as the feedstock. So, you’re producing food and fuel and fiber from the same field and maximizing the carbon conversion efficiency on a per-acre basis. That is the reason why, ultimately, we believe this pathway has a much better eco- and carbon-balance than other pathways.”

As part of the project, Berkeley Lab scientists will conduct atmospheric sensing of greenhouse gases, genomic analyses to characterize the soil microbiome, and life cycle analysis to determine the ratio of carbon input to output. The field experiments will generate massive amounts of data. Arva will use the data to build mathematical models and improve precision agriculture algorithms to help farms become carbon-neutral or even carbon-negative.

“The end products aren’t just looking at greenhouse gas emissions,” said Schuppenhauer, the project’s lead for Arva, who is also a BSE affiliate scientist. “The end products will be things such as: How much fertilizer do we really need? If we can reduce the amount of fertilizer use by half or a quarter, that has implications on fossil fuel use, as it is used in fertilizer production.”

ARPA-E awarded Arva $2.95 million for the project, of which $1.6 million will go to Berkeley Lab. In addition to Simmons, researchers from Berkeley Lab’s Earth and Environmental Sciences Area, the DOE Joint Genome Institute, and the University of Arkansas are also involved.

Making sense of all that data

In the second project, also funded by ARPA-E, Berkeley Lab researchers led by Yuxin Wu will take in the data from the other ARPA-E SMARTFARM teams and develop a common standard for carbon accounting.

Currently, established low-carbon fuel markets can confer sizable financial rewards to products that are produced with low greenhouse gas emissions, bringing farmers as much as $100 per acre in additional revenue. Yet farmers lack a way to measure their carbon footprint.

“If you really want to put a price on carbon from biofuels production, you have to be able to accurately measure emissions of carbon and carbon-equivalents from each farm,” said Wu, head of Berkeley Lab’s Geophysics Department. “That could incentivize farmers to move away from resource-intensive farming, where they are driven to maximize yield by using more fertilizer.”

But carbon accounting is no easy task. “Greenhouse gases are released by plant and root respiration, by the soil, by fertilizer use, and when you pump water or use machinery. It’s a complex equation,” said Wu. “And each farm operates in their own way. How we put together these very different datasets is a challenge.”

ARPA-E awarded Berkeley Lab $1 million for the project.

A software system for farmers

Lastly, Berkeley Lab researchers, led by Nicola Falco and Haruko Wainwright, are partnering with Arva to develop machine-learning software to integrate DOE’s environmental databases with local-scale monitoring and sensing.

The DOE databases and facilities – such as AmeriFlux and ESS-DIVE, a repository for Earth and environmental science data – provide critical datasets for understanding agro-ecosystem functions on the regional and national scales. These functions include greenhouse gas fluxes, evapotranspiration, and soil biogeochemistry.

In this project, the researchers will develop a scalable software system to couple the local-scale datasets – such as from sensors monitoring water, nutrients, and fertilizers – with the DOE datasets. “The DOE’s databases and user facilities offer powerful assessments, yet they have been rarely used for ecosystem management,” said Falco.

The software will be able to, for example, couple evapotranspiration estimates derived from Ameriflux with local soil sensors and drone images to provide information on water management practices. DOE has awarded Arva a small business grant of up to $200,000 for this project.

Berkeley Lab’s efforts to leverage machine learning for sustainable agriculture started in 2018 on a farm in Arkansas. Falco and Wainwright have since developed a suite of algorithms, now available for licensing, to help farmers estimate sprout and plant density using images taken by drones. These estimates, in turn, enable real-time adjustments to boost productivity.

“Berkeley Lab has extensive expertise characterizing soil-plant interactions and other terrestrial ecosystem properties across scales,” said Wainwright. “By working with Arva and its machine-learning capabilities, we hope to transfer our tools and knowledge more quickly for operational management.”

Founded in 1931 on the belief that the biggest scientific challenges are best addressed by teams, Lawrence Berkeley National Laboratory and its scientists have been recognized with 13 Nobel Prizes. Today, Berkeley Lab researchers develop sustainable energy and environmental solutions, create useful new materials, advance the frontiers of computing, and probe the mysteries of life, matter, and the universe. Scientists from around the world rely on the Lab’s facilities for their own discovery science. Berkeley Lab is a multiprogram national laboratory, managed by the University of California for the U.S. Department of Energy’s Office of Science.

DOE’s Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit


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